A Magma Bullet Master, which is what almost every commercial caster uses, (I have one) uses a carousel with 8 molds for each bullet. Each mold is a two cavity design, so this means the bullets are being dropped from 16 different cavities in the molds. While Magma makes every attempt to keep the cavities consistent by using the same cherry to cut each cavity, there are going to be some very minor differences, due to manufacturing processes.
The difference you're measuring could also be from the where the sprue is cut off when the sprue plate opens on the mold. Sometimes there is a little bump there, but it really makes no difference in the performance of the bullet at handgun ranges out to 50 yards.
Measure from the solid base of the bullet and see what that measurement is, and it may be different than measuring from the center of the bullet.
I'll be gone all day today, but I'll check back when I get home tonight to see if you've measured anything different.
Hope this helps.
Fred