You're removing metal.
I'm not an expert. Done some of my own 1911's, some of my S&W & Ruger revolvers and a little work on my P09.
To me, polishing is using a fine grit stone to remove some of the "bumps" in the surface of the metal. The stone will only contact the tops of the high spots/bumps. Yeah, some of the removed metal and stone material will make it into the "valleys" between the high spots/bumps but won't have as much of an effect at the stone contacting the tops of the bumps.
The "finer" the grit on the stone (higher the number - a 600 grit stone is finer than a 280 grit stone and removes less metal for the same amount of effort and will leave a smoother surface) is the smoother the surface will be. I have a Lansky knife sharpening kit with stones from 180 to 1000 grit. I don't even use the 1000 grit stone. After the 600 grit stone the knife will "wipe" the hair off my arm each pass of the blade (used to be funny looking prior to hunting season in college when I was sharpening knives for my buddies - all the bare patches surrounded by hair on my arms.
Remember, you can't put metal back on a piece if you remove too much. Go slow, slower is better, stop often, clean up the part, reinstall it and check function.
Good luck, report back, learn from what you do.
FYI, maybe I did it wrong but I didn't mess with the hammer. I stoned my P09 sear. The amount of what I call "creep", trigger movement after the firing pin safety has been lifted but before the hammer falls, was much more on my P09 than on my P07. I removed the sear and stoned a little bit of metal off the top of the sear. Not the front (no angles changed, no contact surface touched), just "a little off the top". That resulted in the trigger having to move less distance to release the hammer. Also, if I screwed up, the sear is much cheaper to buy and easier to install than a new hammer.
So far, it's been great. Really nice trigger (just like my P07 came from the factory with.)