My P07 and P09 .40 S&W seem to have no issues with longer bullets (they accept/run ammo that chokes a Beretta 90-Two in .40 S&W that my younger son used to shoot - still has it, but doesn't shoot it after the CZ P07 and CZ 75 SA spoiled him with better groups).
My P09 9MM is an example of the short throat CZ "issue." It will not chamber ammo that my CZ 75 Compact eats just fine. I guess it'll have to stay the same, but I might be tempted to work on the CZ 75's some day.